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Minicell-based manufacturing system is used in identifying best minicell designs. The existing method of minicell design generates best minicell designs by designing and scheduling minicells simultaneously. While in this research designing of minicells and scheduling of jobs in minicells is done separately. This research evaluates the effectiveness of hierarchical approach and compares with simultaneous method. Minicell designs with respect to average flow times and machine capacities and both are identified in a multi-stage flow shop environment. Rules for the extraction of good minicell designs in mass customization manufacturing systems are also established
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